Tutores

Campos de conocimiento

Biología de Sistemas y Sintética
Reducción del proteoma de bacteriano asistida por modelos a escala genómica

14. Astudillo-Melgar, Fernando, Adrián Ochoa-Leyva, José Utrilla*, and Gerardo Huerta-Beristain*. 2019. “Bacterial Diversity and Population Dynamics During the Fermentation of Palm Wine From Guerrero Mexico.” Frontiers in Microbiology 10: 531. doi:10.3389/fmicb.2019.00531. (Co-autor de correspondencia) (F.I. 2021: 6.064)
15. Cheng, Chuankai, Edward J. O’Brien, Douglas McCloskey, Jose Utrilla, Connor Olson, Ryan A. LaCroix, Troy E. Sandberg, Adam M. Feist, Bernhard O. Palsson, and Zachary A. King. 2019. “Laboratory Evolution Reveals a Two-Dimensional Rate-Yield Tradeoff in Microbial Metabolism.” PLOS Computational Biology 15 (6): e1007066 (F.I. 2019: 4.43)
16. Kim, J., Darlington, A., Salvador, M., Utrilla, J., & Jiménez, J. I. (2020). Trade-offs between gene expression, growth and phenotypic diversity in microbial populations. Current Opinion in Biotechnology, 62, 29–37. https://doi.org/10.1016/j.copbio.2019.08.004 (F.I. 2021: 10.279)
17. Lastiri-Pancardo, G., Mercado-Hernández, J. S., Kim, J., Jiménez, J. I., & Utrilla, J. (2020). A quantitative method for proteome reallocation using minimal regulatory interventions. Nature Chemical Biology, 1–8. https://doi.org/10.1038/s41589-020-0593-y (Autor de Correspondencia) (F.I. 2021: 16.290)
18. Moreno-Avitia, F., Utrilla, J., Bolívar, F., Nogales, J. and Escalante, A., 2020. Metabolic reconstruction of Pseudomonas chlororaphis ATCC 9446 to understand its metabolic potential as a phenazine-1-carboxamide-producing strain. Applied Microbiology and Biotechnology, 104(23), pp.10119-10132. (F.I. 2021: 5.560)
19. de la Cruz, M., Ramírez, E.A., Sigala, J.C., Utrilla, J. and Lara, A.R., 2020. Plasmid DNA Production in Proteome-Reduced Escherichia coli. Microorganisms, 8(9), p.1444. (F.I. 2021: 4.926)
20. Hidalgo, D., Martínez-Ortiz, C. A., Palsson, B. O., Jiménez, J. I., & Utrilla, J*. (2022). Regulatory perturba-tions of ribosome allocation in bacteria reshape the growth proteome with a trade-off in adaptation capacity. IScience, 25(3), 103879. https://doi.org/10.1016/j.isci.2022.103879 (Autor de Correspondencia) (F.I. 2021: 6.107)
21. Reyes-González, D., De Luna-Valenciano, H., Utrilla, J., Sieber, M., Peña-Miller, R., & Fuentes-Hernández, A. (2022). Dynamic proteome allocation regulates the profile of interaction of auxotrophic bacterial consortia. Royal Society Open Science, 9(5). https://doi.org/10.1098/RSOS.212008 (F.I.2021: 3.656)
22. Márquez‐Zavala, E. and Utrilla, J., 2023. Engineering resource allocation in artificially minimized cells: Is ge-nome reduction the best strategy?. Microbial Biotechnology, 16(5), pp.990-999.
23. Lara, A. R., Utrilla, J., Martínez, L. M.,Krausch, N., Kaspersetz, L., Hidalgo, D., Cruz‐Bournazou, N.,Neubauer, P., Sigala, J.‐C., Gosset, G., & Büchs, J. (2024).Recombinant protein expression in proteome‐reduced cells under aerobic and oxygen‐limited regimes. Biotechnology andBioengineering,1–15.
24. Amaro-Reyes, A., Marcial-Ramírez, D., Vázquez-Landaverde, P.A., Utrilla, J., Escamilla-García, M., Regala-do, C., Macias-Bobadilla, G., Campos-Guillén, J., Ramos-López, M.A. and Favela-Camacho, S.E., 2024. Electrostatic Fermentation: Molecular Response Insights for Tailored Beer Production. Foods, 13(4), p.600.
25. Bello-Gonzalez, M.A, Bedoya-Perez, L.P. Utrilla, J*. 2024 Development of SynBio tools for Pseudomonas chlororaphis: a versatile non- pathogenic bacterium host. Aceptado en: SynBio (MDPI).*Autor de correspondencia
26. Bedoya-Pérez, L.P., Aguilar-Vera, A., Sánchez-Pérez, M., Utrilla, J*. and Sohlenkamp, C., 2024. Enhancing Escherichia coli abiotic stress resistance through ornithine lipid formation. Applied Microbiology and Biotech-nology, 108(1), p.288.
27. Castillo-Alfonso, F., Valadez-Cano, C., Cejas-Añón, G., Utrilla, J., Alanis, J.C.S., Le Borgne, S., Sales-Cruz, A.M., Vigueras-Ramírez, G. and Olivares-Hernández, R., 2024. Sequencing, assembly, and genomic annota-tion of Leucoagaricus gongylophorus LEU18496, a dikarya mutualistic species. Molecular Omics, 20(8), pp.524-531.