Contacto
Campos de conocimiento
Bioinformática
Ciencias Genómicas
Microbiología Molecular
Líneas de investigación
Desarrollo de nuevas metodologías computacionales multidisciplinarias en Bioinformática. Análisis de metagenómica viral y microbiana en muestras humanas de salud y enfermedad. Estudio de la evolución genómica de virus como SARS-CoV-2, influenza y dengue.
Publicaciones
1. Garcia-Lopez,R., Taboada,B.+., Zarate,S., Munoz-Medina,J.E., Salas-Lais,A.G., Herrera-Estrella,A., Boukadida,C., Vazquez-Perez,J.A., Gomez-Gil,B., Sanchez-Flores,A., Arias,C.F. (2024). Exploration of low-frequency allelic variants of SARS-CoV-2 genomes reveals coinfections in Mexico occurred during periods of VOCs turnover. Microbial Genomics, 10 (3), EISSN: 2057-5858. FI: 3.9.
2. Cadenas-Castrejon,E., Verleyen,J., Boukadida,C., Diaz-Gonzalez,L+, Taboada,B.+ (2023). Evaluation of tools for taxonomic classification of viruses. Briefings in Functional Genomics, 22 (1). https://doi.org/10.1093/bfgp/elac036. EISSN: 2041-2657. FI: 4.0.
3.Castelan-Sanchez,H.G., Delaye,L., Inward,R.P.D., Dellicour,S., Gutierrez,B., Martinez de la Vina,N., Boukadida,C., Pybus,O.G., de Anda Jauregui,G., Guzman,P., Flores-Garrido,M., Fontanelli,O., Hernandez-Rosales,M., Meneses,A., Olmedo-Alvarez,G., Herrera-Estrella,A., Sanchez-Flores,A., Munoz-Medina,J.E., Comas-Garcia,A., Gomez-Gil,B., Zarate,S., Taboada,B., Lopez,S., Arias,C.F., Kraemer,M.U.G., Lazcano,A., Escalera-Zamudio,M.+ (2023). Comparing the evolutionary dynamics of predominant SARS-CoV-2 virus lineages co-circulating in Mexico. Elife, 12. https://doi.org/10.7554/eLife.82069. EISSN: 2050-084X. FI: 7.7.
4. Garcia-Lopez,R.+, Rivera-Gutierrez,X., Rosales-Rivera,M., Zarate,S., Munoz-Medina,J.E., Roche,B., Herrera-Estrella,A., Gomez-Gil,B., Sanchez-Flores,A., Taboada,B.+., Arias,C.F. (2023). SARS-CoV-2 BW lineage, a fast-growing Omicron variant from southeast Mexico bearing relevant escape mutations. Infection, 51. https://doi.org/10.1007/s15010-023-02034-7. EISSN: 1439-0973. FI: 7.5.
5. Loza,A., Wong-Chew,R.M., Jimenez-Corona,M.E., Zarate,S., Lopez,S., Ciria,R., Palomares,D., Garcia-Lopez,R., Isa,P., Taboada,B., Rosales,M., Boukadida,C., Herrera-Estrella,A., Mojica,N.S., Rivera-Gutierrez,X., Munoz-Medina,J.E., Salas-Lais,A.G., Sanchez-Flores,A., Vazquez-Perez,J.A., Arias,C.F.+, Gutierrez-Rios,R.M.+ (2023). Two-year follow-up of the COVID-19 pandemic in Mexico. Frontiers in Public Health, 10. https://doi.org/10.3389/fpubh.2022.1050673. FI: 6.5.
6. Perez-Juarez,H., Serrano-Vazquez,A., Godinez-Alvarez,H., Gonzalez,E., Rojas-Velazquez,L., Moran,P., Portillo-Bobadilla,T., Ramiro,M., Hernandez,E., Lau,C., Martinez,M., Padilla,M.L.A., Zaragoza,M.E., Taboada,B., Palomares,L.A., Lopez,S., Alagon,A., Arias,C.F.+, Ximenez,C.+ (2023). Longitudinal anti-SARS-CoV-2 antibody immune response in acute and convalescent patients. Frontiers in Cellular and Infection Microbiology, 13. https://doi.org/10.3389/fcimb.2023.1239700. EISSN: 2235-2988. FI: 5.7.
7. Rivera-Gutierrez,X., Moran,P., Taboada,B.+, Serrano-Vazquez,A., Isa,P., Rojas-Velazquez,L., Perez-Juarez,H., Lopez,S., Torres,J., Ximenez,C.+, Arias,C.F.+ (2023). The fecal and oropharyngeal eukaryotic viromes of healthy infants during the first year of life are personal. Scientific Reports, 13 (1). https://doi.org/10.1038/s41598-022-26707-9. EISSN: 2045-2322. FI: 4.6.
8. Taboada,B.I.*+, Zarate,S.*+, Garcia-Lopez,R., Munoz-Medina,J.E., Gomez-Gil,B., Herrera-Estrella,A., Sanchez-Flores,A., Salas-Lais,A.G., Roche,B., Martinez-Morales,G., Dominguez-Zarate,H., Duque-Molina,C., Aviles-Hernandez,R., Lopez,S., Arias,C.F. (2023). SARS-CoV-2 Omicron variants BA.4 and BA.5 dominated the fifth COVID-19 epidemiological wave in Mexico. Microbial Genomics, 9 (12). https://doi.org/10.1099/mgen.0.001120. EISSN: 2057-5858. FI: 3.9
9. Zarate,S.*+, Taboada,B.*+, Rosales-Rivera,M., Garcia-Lopez,R., Munoz-Medina,J.E., Sanchez-Flores,A., Herrera-Estrella,A., Gomez-Gil,B., Selem-Mojica N., Salas-Lais,A.G., Vazquez-Perez,J.A., Cabrera-Gaytan,D.A., Fernandes-Matano,L., Uribe-Noguez,L.A., Chale-Dzul,J.B., Maldonado Meza,B.I., Mejia-Nepomuceno,F., Perez-Padilla,R., Gutierrez-Rios,R.M., Loza,A, Roche,B, Lopez,S, Arias,C.F+ (2023). Omicron-BA.1 Dispersion Rates in Mexico Varied According to the Regional Epidemic Patterns and the Diversity of Local Delta Subvariants. Viruses, 15 (1). https://doi.org/10.3390/v15010243. EISSN: 1999-4915. FI: 4.7.
10. Boukadida,C*., Taboada,B*., Escalera-Zamudio,M., Isa,P., Ramirez-Gonzalez,J.E., Vazquez-Perez,J.A., Munoz-Medina,J.E., Grajales-Muniz,C., Gonzalez-Torres,C., Gaytan-Cervantes,F.J., Rincon-Rubio,A., Matias-Florentino,M., Paz-Juarez,H.E., Sanchez-Flores,A., Mendieta-Condado,E., Barrera-Badillo,G., Hernandez-Rivas,L., Lopez,S., Lopez-Martinez,I, Avila-Rios,S., Arias,C.F.+ (2022). Genomic Characterization of SARS-CoV-2 Isolated from Patients with Distinct Disease Outcomes in Mexico. Microbiology Spectrum, 10 (1). https://doi.org/10.1128/spectrum.01249-21. EISSN: 2165-0497. FI: 5.1.
11. Hernandez-Teran,A., Garciadiego-Fossas,P, Villanueva-Reza,M, Boukadida,C, Taboada,B, Porras,E, Ahumada-Topete,V., Tapia-Diaz,K.E, Matias-Florentino,M., Perez-Garcia,M., Avila-Rios,S., Mejia-Nepomuceno,F, Serna-Munoz,R, Juarez-Hernandez,F., Jimenez-Corona,M.E., Becerril-Vargas,E, Barreto,O, Martinez-Orozco,J.A, Perez-Padilla,R., Arias,C.F, Vazquez-Perez,J.A.+ (2022). Clinical and Virological Features of Patients Hospitalized with Different Types of COVID-19 Vaccination in Mexico City. Vaccines (Basel), 10 (8). https://doi.org/10.3390/vaccines10081181, EISSN: 2076-393X. FI: 7.8.
12. Isa,P.+, Taboada,B., Garcia-Lopez,R., Boukadida,C., Ramirez-Gonzalez,J.E., Vazquez-Perez,J.A., Hernandez-Teran,A., Romero-Espinoza,J.A., Munoz-Medina,J.E., Grajales-Muniz,C., Rincon-Rubio,A., Matias-Florentino,M., Sanchez-Flores,A., Mendieta-Condado,E., Barrera-Badillo,G., Lopez,S., Hernandez-Rivas,L., Lopez-Martinez,I., Avila-Rios,S., Arias,C.F.+ (2022). Metagenomic analysis reveals differences in the co-occurrence and abundance of viral species in SARS-CoV-2 patients with different severity of disease. BMC Infectious Diseases, 22 (1). https://doi.org/10.1186/s12879-022-07783-8. EISSN: 1471-2334. FI: 3.7.
13. Rivera-Gutierrez,X., Moran,P., Taboada,B., Serrano-Vazquez,A., Isa,P., Rojas-Velazquez,L., Perez-Juarez,H., Lopez,S., Torres,J.+, Ximenez,C.+, Arias,C.F.+ (2022). High Prevalence and Diversity of Caliciviruses in a Community Setting Determined by a Metagenomic Approach. Microbiology Spectrum, 10 (1). https://doi.org/10.1128/spectrum.01853-21. EISSN: 2165-0497. FI: 5.1.
14. Taboada,B.*+, Zarate,S.*+, Garcia-Lopez,R., Munoz-Medina,J.E., Sanchez-Flores,A., Herrera-Estrella,A., Boukadida,C., Gomez-Gil,B., Selem-Mojica N., Rosales-Rivera,M., Salas-Lais,A.G., Gutierrez-Rios,R.M., Loza,A., Rivera-Gutierrez,X., Vazquez-Perez,J.A., Avila-Rios,S., Hurtado,J.M., Herrera-Najera,C.I., Nunez-Contreras,J.J., Sarquiz-Martinez,B, Garcia-Arias,V.E., Santiago-Mauricio,M.G., Martinez-Miguel,B., Enciso-Ibarra,J., Chaidez-Quiroz,C., Isa,P., Wong-Chew,R.M., Jimenez-Corona,M.E., Lopez,S., Arias,C.F.+ (2022). Dominance of Three Sublineages of the SARS-CoV-2 Delta Variant in Mexico. Viruses, 14 (6). https://doi.org/10.3390/v14061165. EISSN: 1999-4915. FI: 4.7.
15. Zarate,S.*+, Taboada,B.*+, Munoz-Medina,J.E., Isa,P., Sanchez-Flores,A., Boukadida,C., Herrera-Estrella,A., Selem-Mojica N., Rosales-Rivera,M., Gomez-Gil,B., Salas-Lais,A.G., Santacruz-Tinoco,C.E., Montoya-Fuentes,H., ALvarado-Yaah,J.E., Molina-Salinas,G.M., Espinoza-Ayala,G.E., Enciso-Moreno,J.A., Gutierrez-Rios,R.M., Loza,A., Moreno-Contreras,J., Garcia-Lopez,R., Rivera-Gutierrez,X., Comas-Garcia,A., Wong-Chew,R.M., Jimenez-Corona,M.E., del Angel,R.M., Vazquez-Perez,J.A., Matias-Florentino,M., Perez-Garcia,M., Avila-Rios,S., Castelan-Sanchez,H.G., Delaye,L., Martinez-Castilla,L.P., Escalera-Zamudio,M., Lopez,S., Arias,C.F.+ (2022). The Alpha Variant (B.1.1.7) of SARS-CoV-2 Failed to Become Dominant in Mexico. Microbiology Spectrum, 10 (2). https://doi.org/10.1128/spectrum.02240-21. EISSN: 2165-0497. FI: 5.1.
16. Garcia-Hernandez,M.E., Trujillo-Ortega,M.E., Alcaraz-Estráda,S.L., Lozano-Aguirre-Beltran,L., Sandoval-Jaime,C., Taboada-Ramirez,B.I., Sarmiento-Silva,R.E.+ (2021). Molecular Detection and Characterization of Porcine Epidemic Diarrhea Virus and Porcine Aichivirus C Coinfection in Mexico. Viruses, 13 (5). https://doi.org/10.3390/v13050738. EISSN: 1999-4915. FI: 4.7.
17. Rodriguez-Maldonado,A.P.*, Vazquez-Perez,J.A.*, Cedro-Tanda,A., Taboada,B.*, Boukadida,C.*, Wong-Arambula,C., Nunez-Garcia,T.E., Cruz-Ortiz,N., Barrera-Badillo,G., Hernandez-Rivas L., Lopez-Martinez,I., Mendoza-Vargas,A., Reyes-Grajeda,J.P., Alcaraz,N., Penaloza-Figueroa,F., Gonzalez-Barrera,D., Rangel-DeLeon,D., Herrera-Montalvo,L.A., Mejia-Nepomuceno,F., Hernandez-Teran,A., Mujica-Sanchez,M., Becerril-Vargas,E., Martinez-Orozco,J.A., Perez-Padilla,R., Salas-Hernandez,J., Sanchez-Flores,A., Isa,P., Matias-Florentino,M., Avila-Rios,S., Munoz-Medina,J.E., Grajales-Muniz,C., Salas-Lais,A.G., Santos Coy-Arechavaleta,A., Hidalgo-Miranda,A.+, Arias,C.F.+, Ramirez-Gonzalez,J.E.+ (2021). Emergence and spread of the potential variant of interest (VOI) B.1.1.519 of SARS-CoV-2 predominantly present in Mexico. Archives of Virology, 166. https://doi.org/10.1007/s00705-021-05208-6. EISSN: 1432-8798. FI: 2.7.
18. Taboada,B., Moran,P., Serrano-Vazquez,A., Isa,P., Rojas-Velazquez,L., Perez-Juarez,H., Lopez,S., Torres,J., Ximenez,C., Arias,C.F.+ (2021). The gut virome of healthy children during the first year of life is diverse and dynamic. PLoS ONE, 16(4). https://doi.org/10.1371/journal.pone.0240958. EISSN: 1932-6203. FI: 3.7.
19. Taboada-Ramirez,B.*, Zarate,S.*, Isa,P., Boukadida,C., Vazquez-Perez,J.A., Munoz-Medina,J.E., Ramirez-Gonzalez,J.E., Comas-Garcia,A., Grajales-Muniz,C., Rincon-Rubio,A., Matias-Florentino,M., Sanchez-Flores,A., Mendieta-Condado,E., Verleyen,J., Barrera-Badillo,G., Hernandez-Rivas,L., Mejia-Nepomuceno,F., Martinez-Orozco,J.A., Becerril-Vargas,E., Lopez,S., Lopez-Martinez,I., Avila-Rios,S., Arias,C.F.+ (2021). Genetic Analysis of SARS-CoV-2 Variants in Mexico during the First Year of the COVID-19 Pandemic. Viruses, 13 (11). https://doi.org/10.3390/v13112161. EISSN: 1999-4915. FI: 4.7.
20. Aguado-Garcia,Y.*, Taboada,B.*, Moran,P., Rivera-Gutierrez,X., Serrano-Vazquez,A., Isa,P., Rojas-Velazquez,L., Perez-Juarez,H., Lopez,S., Torres,J., Ximenez,C.+, Arias,C.F.+ (2020). Tobamoviruses can be frequently present in the oropharynx and gut of infants during their first year of life. Scientific Reports, 10. https://doi.org/10.1038/s41598-020-70684-w. EISSN: 2045-2322. FI: 4.6.
21. Lopez-Santaella,T., Alvarez Y Munoz,T., Medeiros-Domingo,M., Moreno-Espinosa,S., Consuelo-Sanchez,A., Munoz-Hernandez O., Sarmiento-Silva R.E., Sotomayor-Gonzalez A., Trujillo-Ortega M.E., Garcia-Hernandez M.E., Taboada-Ramírez B.I., Arenas-Huertero F.+ (2020). Serological and molecular study of Hepatitis E virus in pediatric patients in Mexico. Annals of Hepatology, 19 (3). https://doi.org/10.1016/j.aohep.2019.12.004. EISSN: 1665-2681. FI: 3.8.
22. Ramirez,D., Vega-Alvarado,L., Taboada,B., Estradas-Romero,A., Soto,L., Juarez,K.+, (2020). Bacterial diversity in surface sediments from the continental shelf and slope of the Northwest Gulf of Mexico and the presence of hydrocarbon degrading bacteria. Marine Pollution Bulletin, 150. https://doi.org/10.1016/j.marpolbul.2019.110590. EISSN: 1879-3363. FI: 5.8.
23. Taboada,B., Vazquez-Perez,J.A., Munoz-Medina,J.E., Ramos-Cervantes,P., Escalera-Zamudio,M., Boukadida,C., Sanchez-Flores,A., Isa,P., Mendieta-Condado,E., Martinez-Orozco,J.A., Becerril-Vargas,E., Salas-Hernandez,J., Grande,R., Gonzalez-Torres,C., Gaytan-Cervantes,F.J., Vazquez,G., Pulido,F., Araiza-Rodriguez,A., Garces-Ayala,F., Gonzalez-Bonilla,C.R., Grajales-Muniz,C., Borja-Aburto,V., Barrera-Badillo G.,Lopez,S., Hernandez-Rivas,L., Perez-Padilla,R.+, Lopez-Martinez,I.+, Avila-Rios,S.+, Ruiz-Palacios,G., Ramirez-Gonzalez,J.E.+, Arias,C.F.+ (2020). Genomic Analysis of Early SARS-CoV-2 Variants Introduced in Mexico, Journal of Virology, 94 (18). https://doi.org/10.1128/JVI.01056-20. EISSN: 1098-5514. FI: 5.4.
