Contacto
Campos de conocimiento
Bioinformática
Ciencias Genómicas
Microbiología Molecular
Líneas de investigación
Mis lineas se centran el estudio de las redes de regulación genético-metabolicas y de fosfotransferencia en bacterias. Usamos enfoques bioinformaticos basados en genómica comparativa, evolución, modelado dinámico y desarrollo e implementacion de métodos computacionales. Recientemente hemos desarrollado lineas de invetigación experimentales usando a B. subtilis como modelo de estudio y desarrollo de métodos de análisis metagenómicos.
Publicaciones
Carreon-Rodriguez,O.E. Gutierrez-Rios,R.M. Acosta,J.L. Martinez,A. Cevallos,M.A. 2019. Phenotypic and genomic analysis of Zymomonas mobilis ZM4 mutants with enhanced ethanol tolerance Biotechnology Reports, 23, e00328.
Godoy-Lozano,E.E. Escobar-Zepeda,A. Raggi,L. Merino,E. Gutierrez-Rios,R.M. Juarez,K. Segovia,L. Licea-Navarro,A.F. Gracia,A. Sanchez-Flores,A. Pardo-Lopez,L. 2018. Bacterial diversity and the geochemical landscape in the southwestern Gulf of Mexico Frontiers in Microbiology, 9, 2528.
Vazquez-Hernandez,C. Loza,A. Gutierrez-Rios,R.M. 2018. Reactant pairs and reaction organization patterns produced by a new rule-based approach BMC Research Notes, 11, 608.
Escobar-Zepeda,A. Godoy-Lozano,E.E. Raggi,L. Segovia,L. Merino,E. Gutierrez-Rios,R.M. Juarez,K. Licea-Navarro,A.F. Pardo-Lopez,L. Sanchez-Flores,A. 2018. Analysis of sequencing strategies and tools for taxonomic annotation: Defining standards for progressive metagenomics Scientific Reports, 8, 12034.
Carlos Vazquez-Hernandez; Antonio Loza; Esteban Peguero-Sanchez; Lorenzo Segovia; Rosa-Maria Gutierrez-Rios,
Identification of reaction organization patterns that naturally cluster enzymatic transformations. accepted. BMC Systems Biology. 2018. SYBO-D-17-00112R1
Vicens,A. Andrade-Lopez,K. Cortez,D. Gutierrez,R.M. Trevino,C.L. 2017. Premammalian origin of the sperm-specific Slo3 channel FEBS Open Bio, 7, 382-390.
Vega-Cabrera,L.A. Guerrero,A. Rodriguez-Mejia,J.L. Tabche,M.L. Wood,C.D. Gutierrez-Rios,R.M. Merino,E. Pardo-Lopez,L. 2017. Analysis of Spo0M function in Bacillus subtilis PLoS ONE, 12, e0172737.
Medina-Aparicio,L. Rebollar-Flores,J.E. Beltran-Luviano,A.A. Vazquez-Ramos A. Gutierrez-Rios,R.M. Olvera,L. Calva,E. Hernandez-Lucas,I. 2017. The CRISPR-Cas system presents multiple transcriptional units including antisense RNAs that are expressed in minimal medium and up-regulated by pH in Salmonella enterica serovar Typhi Microbiology, 163, 253-265.
Martinez,M.A. Soto-Del Rio,M.D. Gutierrez,R.M. Greninger,A.L. Contreras,J.F. Lopez,S. Arias,C.F. Isa,P. 2015. DNA microarray for detection of gastrointestinal viruses Journal of Clinical Microbiology, 53, 136-145.
Villarreal,J.M. Becerra-Lobato,N. Rebollar-Flores,J.E. Medina-Aparicio,L. Carbajal-Gomez,E. Zavala-Garcia,M.L. Vazquez,A. Gutierrez-Rios,R.M. Olvera,L. Encarnacion,S. Martinez-Batallar,A.G. Calva,E. Hernandez-Lucas,I. 2014. The Salmonella enterica Serovar Typhi ltrR-ompR-ompC-ompF Genes are Involved in Resistance to the Bile Salt Sodium Deoxycholate and in Bacterial Transformation Molecular Microbiology, 92, 1005-1024.
Cortes-Tolalpa,L. Gutierrez-Rios,R.M. Martinez,L.M. de Anda,R. Gosset,G. Bolivar,F. Escalante,A. 2014. Global transcriptomic analysis of an engineered Escherichia coli strain lacking the phosphoenolpyruvate: carbohydrate phosphotransferase system during shikimic acid production in rich culture medium Microbial Cell Factories, 13, 28.
Paulin,L.F. Soto-Del Rio,M.D. Sanchez,I. Hernandez,J. Gutierrez-Rios,R.M. Lopez-Martinez,I. Wong-Chew,R.M. Parissi-Crivelli,A. Isa,P. Lopez,S. Arias,C.F. 2014. PhyloFlu, a DNA microarray to determine the phylogenetic origin of influenza A gene segments and the genomic fingerprint of viral strains Journal of Clinical Microbiology, 52, 803-813.
Freyre-Gonzalez,J.A. Manjarrez-Casas,A.M. Merino,E. Martinez-Nunez,M. Perez-Rueda,E. Gutierrez-Rios,R.M. 2013. Lessons from the modular organization of the transcriptional regulatory network of Bacillus subtilis BMC Systems Biology, 7, 127.
Vazquez,C.D. Freyre-Gonzalez,J.A. Gosset,G. Loza,J.A. Gutierrez-Rios,R.M. 2009. Identification of network topological units coordinating the global expression response to glucose in Bacillus subtilis and its comparison to Escherichia coli BMC Microbiology, 9, 176.
