Contacto
Campos de conocimiento
Bioinformática
Biorremediación
Ciencias Genómicas
Líneas de investigación
Monitoreo de microorganismos en aguas residuales mediante cuantificación dirigida y metagenómica.
Vigilancia genómica y epidemiológica del Virus SARS-CoV-2 en México.
Publicaciones
1. García-López R*, Taboada B*, Zárate S, Muñoz-Medina JE, Salas-Lais AG, Herrera-Estrella A, Boukadida C, Vazquez-Perez JA, Gómez-Gil B, Sanchez-Flores A, Arias CF*. Exploration of low-frequency allelic variants of SARS-CoV-2 genomes reveals coinfections in Mexico occurred during periods of VOCs turnover. Microb Genom. 2024 Mar;10(3):001220. doi: 10.1099/mgen.0.001220.
*Autores de Correspondencia
2. SARS-CoV-2 Omicron variants BA.4 and BA.5 dominated the fifth COVID-19 epidemiological wave in Mexico. Taboada B, Zárate S, García-López R, Muñoz-Medina JE, Gómez-Gil B, Herrera-Estrella A, Sanchez-Flores A, Salas-Lais AG, Roche B, Martínez-Morales G, Domínguez Zárate H, Duque Molina C, Avilés Hernández R, López S, Arias CF. Microb Genom. 2023 Dec;9(12):001120. doi: 10.1099/mgen.0.001120.
3. SARS-CoV-2 BW lineage, a fast-growing Omicron variant from southeast Mexico bearing relevant escape mutations. García-López R*, Rivera-Gutiérrez X, Rosales-Rivera M, Taboada B*, Zárate S, Muñoz-Medina JE, Roche B, Herrera-Estrella A, Gómez-Gil B, Sanchez-Flores A, Arias CF. Infection. 2023 Apr 14. doi: 10.1007/s15010-023-02034-7.
*Autores de correspondencia
4. Omicron-BA.1 Dispersion Rates in Mexico Varied According to the Regional Epidemic Patterns and the Diversity of Local Delta Subvariants. Zárate S, Taboada B, Rosales-Rivera M, García-López R, Muñoz-Medina JE, Sanchez-Flores A, Herrera-Estrella A, Gómez-Gil B, Selem Mojica N, Salas-Lais AG, Vazquez-Perez JA, Cabrera-Gaytán DA, Fernandes-Matano L, Uribe-Noguez LA, Chale-Dzul JB, Maldonado Meza BI, Mejía-Nepomuceno F, Pérez-Padilla R, Gutiérrez-Ríos RM, Loza A, Roche B, López S, Arias CF. Viruses. 2023 Jan 15;15(1):243. doi: 10.3390/v15010243.
5. Two-year follow-up of the COVID-19 pandemic in Mexico. Loza A, Wong-Chew RM, Jiménez-Corona ME, Zárate S, López S, Ciria R, Palomares D, García-López R, Iša P, Taboada B, Rosales M, Boukadida C, Herrera-Estrella A, Mojica NS, Rivera-Gutierrez X, Muñoz-Medina JE, Salas-Lais AG, Sanchez-Flores A, Vazquez-Perez JA, Arias CF, Gutiérrez-Ríos RM. Front Public Health. 2023 Jan 13;10:1050673. doi: 10.3389/fpubh.2022.1050673. ECollection 2022.
6. Metagenomic analysis reveals differences in the co-occurrence and abundance of viral species in SARS-CoV-2 patients with different severity of disease. Iša P, Taboada B, García-López R, Boukadida C, Ramírez-González JE, Vázquez-Pérez JA, Hernández-Terán A, Romero-Espinoza JÁ, Muñoz-Medina JE, Grajales-Muñiz C, Rincón-Rubio A, Matías-Florentino M, Sanchez-Flores A, Mendieta-Condado E, Barrera-Badillo G, López S, Hernández-Rivas L, López-Martínez I, Ávila-Ríos S, Arias CF. BMC Infect Dis. 2022 Oct 19;22(1):792. doi: 10.1186/s12879-022-07783-8.
7. The New SARS-CoV-2 Variants and Their Epidemiological Impact in Mexico. García-López R, Laresgoiti-Servitje E, Lemus-Martin R, Sanchez-Flores A, Sanders-Velez C. mBio. 2022 Aug 16:e0106021. doi: 10.1128/mbio.01060-21.
8. Dominance of Three Sublineages of the SARS-CoV-2 Delta Variant in Mexico. Taboada B, Zárate S, García-López R, Muñoz-Medina JE, Sanchez-Flores A, Herrera-Estrella A, Boukadida C, Gómez-Gil B, Selem Mojica N, Rosales-Rivera M, Salas-Lais AG, Gutiérrez-Ríos RM, Loza A, Rivera-Gutierrez X, Vazquez-Perez JA, Matías-Florentino M, Pérez-García M, Ávila-Ríos S, Hurtado JM, Herrera-Nájera CI, Núñez-Contreras JJ, Sarquiz-Martínez B, García-Arias VE, Santiago-Mauricio MG, Martínez-Miguel B, Enciso-Ibarra J, Cháidez-Quiróz C, Iša P, Wong-Chew RM, Jiménez-Corona ME, López S, Arias CF. Viruses. 2022 May 27;14(6):1165. doi: 10.3390/v14061165.
9. The Alpha Variant (B.1.1.7) of SARS-CoV-2 Failed to Become Dominant in Mexico. Zárate S, Taboada B, Muñoz-Medina JE, Iša P, Sanchez-Flores A, Boukadida C, Herrera-Estrella A, Selem Mojica N, Rosales-Rivera M, Gómez-Gil B, Salas-Lais AG, Santacruz-Tinoco CE, Montoya-Fuentes H, Alvarado-Yaah JE, Molina-Salinas GM, Espinoza-Ayala GE, Enciso-Moreno JA, Gutiérrez-Ríos RM, Loza A, Moreno-Contreras J, García-López R, Rivera-Gutierrez X, Comas-García A, Wong-Chew RM, Jiménez-Corona ME, Del Angel RM, Vazquez-Perez JA, Matías-Florentino M, Pérez-García M, Ávila-Ríos S, Castelán-Sánchez HG, Delaye L, Martínez-Castilla LP, Escalera-Zamudio M, López S, Arias CF. Microbiol Spectr. 2022 Apr 27;10(2):e0224021. doi: 10.1128/spectrum.02240-21.
10. Gut dsDNA virome shows diversity and richness alterations associated with childhood obesity and metabolic syndrome. Bikel S, López-Leal G, Cornejo-Granados F, Gallardo-Becerra L, García-López R, Sánchez F, Equihua-Medina E, Ochoa-Romo JP, López-Contreras BE, Canizales-Quinteros S, Hernández-Reyna A, Mendoza-Vargas A, Ochoa-Leyva A. iScience. 2021 Jul 24;24(8):102900. doi: 10.1016/j.isci.2021.102900.
11. OTUs and ASVs Produce Comparable Taxonomic and Diversity from Shrimp Microbiota 16S Profiles Using Tailored Abundance Filters. García-López R, Fernanda Cornejo-Granados F, Lopez-Zavala AA, Cota-Huízar A, Sotelo-Mundo RR, Bruno Gómez-Gil B, Ochoa-Leyva A. Genes. 2021 Apr 13;12(4):564. doi: 10.3390/genes12040564.
12. High-throughput sequencing of the 16S rRNA gene to analyze the gut microbiome in juvenile and adult tropical gar (Atractosteus tropicus). Méndez-Pérez R, García-López R, Bautista-López JS, Vázquez-Castellanos JF, Alvarez-González C, Peña-Marín E, Baltierra-Trejo E, Adams-Schroeder R, Domínguez-Rodríguez V, Melgar-Valdés C, Martínez-García R, Moya A, Gómez-Cruz R. LAJAR. 2020. 3(48). doi:10.3856/vol48-issue3-fulltext-2419
13. Metatranscriptomic analysis to define the secrebiome, and 16S rRNA proiling of the gut microbiome in obesity and metabolic syndrome of Mexican children. Gallardo-Becerra L*, Cornejo-Granados F*, García-López R*, Valdez-Lara A, Bikel S, Canizales-Quinteros S, López-Contreras BE, Mendoza-Vargas A, Nielsen H. and Ochoa-Leyva A. Microb Cell Fact. 2020. doi: 10.1186/s12934-020-01319-y
*Igual Contribución
14. Doing More with Less: A Comparison of 16S Hypervariable Regions in Search of Defining the Shrimp Microbiota. García-López R, Cornejo-Granados F, Lopez-Zavala AA, Sánchez-López F, Cota-Huízar A, Sotelo-Mundo RR, Guerrero A, Mendoza-Vargas A, Gómez-Gil B, Ochoa-Leyva A. Microorganisms. 2020 Jan 17;8(1). pii: E134. doi: 10.3390/microorganisms8010134.
